I'm pretty sure the majority did, but there was a lone few that didnt.
Not like it really mattered, as mace Windu said, the jedi cant be an army, there just arent enough. They're peace keepers. maybe, just MAYBE if they were all on one planet, that would have been easily defendable, and could protect themselves from things like the death star, the Jedi could have lived and survived. and then they could make their own clones.
Still, there's a lot of different books out there, and alot of *puts up shield* fan fiction, so I'm sure there are enough were the clones decided not to, and launched a subtle war against the Empire.