well, I kind of have an answerZontar said:The Angels and SEELE from Evangelion.
This is mostly because of the fact that neither group was ever given an explanation for their motivations (at least not in any material which was translated) so we never understand why the Angels want to wipe out humanity, or how SEELE came to the conclusion that wiping out humanity in their own way was in any way in their interest. The only villains we do understand the motive of is Gendo, and that's just because he ended up being the biggest pussy who couldn't deal with lose in history.
the angels are pretty much what we as humans are (angels are just other forms we could have taken) it's not that they seek to destroy humanity but rather out of a biological desire to fulfill their role as we did by merging with what is essentially proto life and then becoming the dominant species - they are destructive solely for the reason that humans are preventing them from fulfilling what they were born to do.
Seele on the other hand wants to ensure humanity's survival by eliminating the angels by a prophecy (at least as far as the end of evangelion movie stated) in order to evolve humanity into a more perfect form - something along the lines of what the angels are trying to accomplish - they seek evolution by merging with the proto human
of course this is mere speculation
Seele on the other hand wants to ensure humanity's survival by eliminating the angels by a prophecy (at least as far as the end of evangelion movie stated) in order to evolve humanity into a more perfect form - something along the lines of what the angels are trying to accomplish - they seek evolution by merging with the proto human
of course this is mere speculation