Zelda PH help

[SnowCold]

I have this wierd problom in TLoZ PH, and I though maybe you guys can help me with it.

After beating the final boss, there is no point I can save, and when I reopen the save file I'm just before

Spoiler

His ship form

. Is that ment to happen?

And if it is ment to happen, how do I complete all the side quests?,

Spoiler

Since the spirits and Linebeck are gone

 

[SnowCold]

I don't want to be a douche, but no one is helping.

So shameless bump away!