Heres mine: The game starts with Ocarina, and at the end when Link gets sent back to when he was a kid, essentially creating two timelines. One that no longer has a Link, and one where he is a child again. In the one where he is a child, Link and Zelda warn the king of Ganondorf, and he is sentanced to death, which leads into Twilight Princess. In the timeline which no longer has a Link, Ganon escapes the sacred realm, and since Link no longer exists in that world, the king has no choice but to flood Hyrule, leading to Wind Waker. Obviously direct sequels follow after their respective games, like Majoras mask. Minish cap follows Wind Waker, because of the Ganon statue with the sword in his forehead. Not sure where anything else fits in. I have some ideas, but nothing concrete. Anyone else have any theories?