Hmmm, to be honest I don't agree much with either of the central "issues" here. In a fantasy context if you have evil monsters/sorceors having heroes that fight them just goes with the territory. In this case them fighting witches in a world where they, along with monsters like trolls, are real is pretty cool. It's by no means unique of course, while "The Brothers Grimm" is mentioned, I tend to look back to the old Julian Sands movie "Warlock" as an example of
a literal witch hunter being the hero (and it got several sequels). As far as a girl getting beaten up in movies, well, to put it bluntly if your going to have women out there kicking butt, there is no reason why they shouldn't get their butts kicked also, equal presentation all around. I find it laughable to not have people complain about movies where a girl clobbers a bunch of dudes, but then scream for justice when dudes beat up a girl, especially if the girl was trying to be violent first.
On the latter point I think it goes back to the general understanding that in RL girls are generally a lot weaker than guys, and as a result it's typically better for them to run away than trying to fight some dude. Given equal training and time working out a guy will just about always win, not to mention maxing out higher and yeah... it's unfair but true, as much as people might wish otherwise, as demonstrated by most of the times when groups like ESPN have given female martial arts champions chances to fight against similarly ranked men and "prove a point". Thus when we see a girl getting hammered by a really rugged dude it seems kind of unfair. In a fantasy context though where we're omitting all of the reality of women in combat, and have some girl clobbering dudes that outweigh her by a hundred pounds of more in addition to being tough/trained, it's less of a big deal because of the character. You step into that arena, you open yourself up to be on the receiving end.
To be honest I feel things like the "Hitman: Absolution" trailer are kind of refreshing actually, even if the outcry is going to probably move things backwards. Right there we saw equality with women being used the same way guys are in an action scene. Compared to other even more obnoxious and definatly sexist "tropes" where girls can only fight other girls for the sake of a male character retaining his purity, it's kind of refreshing. In a lot of movies you can pretty much assume that if the bad guy has a girl working with him and doing stuff, by the time the credits roll the hero's love interest will probably have taken her down in a cat fight. Sometimes even leading to painful scenes where a guy doofily proclaims "I cannot hit a girl" (despite this girl having like mass murdered 20 people), right before his girlfriend steps up and says something like "but I can!" as the cat fight commences... which is exactly what we'd be going back to if guys like Bob get their way.
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As far as the real witch hunts go, my opinions are mixed. The political correct brigade has pretty much taken the worst excesses of the entire period, and the cases where we suspect the wrong desician was made, and used that to create a portrayal of what the entire thing was like, all the time, which isn't entirely accurate.
At the end of the day remember differant morality prevailed, and things like the US's "seperation of church and state" did not exist. Following a non-christian religion was pretty much a crime, and at this point all punishments were pretty heinous. What the church did to Pagans seems unusually bad, but wasn't all that singularly unusual, the authorities torturing people for crimes of any sort was a matter of course and why nations like the US have created laws against "cruel and unusual punishment". Truthfully the church was just as bad, if not worse, to other Christians than they were to the so called "witches", if you look at some of the crap that went down between the Catholics and Protestants (which still fuels conflicts today) that should be obvious.
On top of this a lot of those early pagans were pretty bloody nasty when you get down to it. Today when a liberal goes off about this, they try and draw analogies to modern new agers and such, but truthfully that wasn't what it was like (and everyone knows it, even today you can find some remaining records of what people believed was black magic and such, and people in New Age shops and such might not practice it but have an understanding of it, you can have some interesting conversations on the subject). If you watch TV and a lot of the stuff on the history channel or whatever they occasionally do shows going through sites of mass graves where dead babies and such were buried in early pagan rituals, and find all kinds of wierd crap in basements in rural england and such. I remember seeing one show where they had this room in one basement where there were hundreds of skulls in the walls, some of which dated back to the middle ages, and an altar-pit in the middle of the floor. The bottom line is that in many cases The Church was going after some really, really, bad people who were basically engages in seriel murders in the name of their religion... which isn't surprising when you look at what some of those religions were like before the civilization of the area. The portrayal of say a "Druid" tends to vary with whether someone wants to defend it in connection with New Age traditions and tolerance, and say talk about it in context of Celts going to war against the Romans all of the horrible things they did to the soldiers they brought down as part of religious observances (and to their own people when they didn't have prisoners).
The point I'm getting at here is that I don't find The Witch Hunts to be inherantly offensive, it was a differant time, with differant principles, and by modern standards everyone on all sides of things like that were morally abhorrant. Sure, innocent people probably died, but that can be said about most things, and I honestly don't think that most of the people on the receiving end were innocent by the standards used, and a lot of them were probably people that would fall into modern seriel killer profiles (with a religious motive), the kinds of people that we sometimes wish would could regress society on to punish them more adequetly. Over the years I've heard both sides of it, as well as some stuff not intended in this context that can be applied. Rather than QQing about the Inquisition and any mention of it it's better to just summarize it as "the ancient world sucked, I'm glad I didn't live then".
To me, being a good Witch Hunter is no differant than say an exorcism movie. I'm not a big believer in empowered witches or demons possessing people. In the context of a movie the mythology of it can be fun though. Hansel and Gretal killing witches, or the time travelling antics of "Warlock" are really no differant than a movie like "The Exorcist" or any of it's numerous imitations and knockoffs where girls are pretty much tortured in the name of getting the evil out of them. It's based on real practices, but instead of a wayward daughter, we're making a movie where actual supernatural evil is involved.... same thing pretty much.