The Sly series does the best QTEs ever. They're in their own minigame class, you do them all in one big chunk rather than popping up at random points. The game gives you time to memorize then repeat the button inputs rather than forcing you to respond correctly RIGHT AWAY, the stuff on the screen is funny (opera, tango dancing) and the music accompanying the sequence is usually excellent. Oh, and you can continue with the sequence even if you flub a button input.
I actually LIKE the QTEs in Sly 2 and Sly 3. Well, I'm only a little bit into Sly 3, so don't quote me on that one, but the tango dancing in Sly 2 was awesome.