Let's get the basics.
Skyward sword -> Ocarina of Time Adult Link -> Wind Waker -> Phantom Hourglass -> Spirit Tracks
'-> Ocarina of Time Young Link -> Majora's Mask -> Twilight Princess
We can all probably agree on this. Other games fit within this timeline, or after it. Sorry for all the singular-timeline theorists, the split timeline makes more sense in my opinion.
Different pieces of timelines.
Zelda 1 -> Zelda 2
Oracle of Seasons/Ages, depends on order of play.
Minish Cap -> Four Swords -> Four Swords Adventures [Not sure which comes first, FS or FSA, never played them]
Can we all agree on this?
That leaves Link's Awakening and ALttP and the placement of previously mentioned timeline segments. I am tired so I will just leave this here for the community to play with.