No. I don't care about people who dislike religion. I only care when they try to force their dislike onto others. Are you really saying that being intolerant of intolerance and bigotry is a bad thing?
Explain how telling someone you think they are wrong is forcing their dislike on others.
Explain how I can force an idea on someone.
I could care less if you call me a bigot, bigotry is simply holding onto an idea, and if the idea is good, there's nothing wrong with it. The words become associated with racism, ethnocentrism, all the bad connotations. But being bigoted against stupid? Yeah.
You have an incredibly thin skin if an internet discussion where beliefs are called silly, dangerous or unworthy of respect is intolerance.
People can be worthy of respect, beliefs deserve no quarter. They don't have feelings. And if you can't distinguish the two, you're the one with the silly belief.
Beliefs don't have a skin color. I don't need to tolerate a belief, only the person holding it. Part of what I see as wrong in the world today is the incredible sense of entitlement people have when they are being stupid. That all ideas are created equal. So we get kids coming out of college who think that they can argue all the answers on the test until they get an 'A', its all relative, and then find out that the real world doesn't care how special a snowflake your instructors thought you were.