Not a movie, but there was one time in Batman: The Animated Series when I clearly wanted Batman to keep his nose out of things. It is the classic (and somewhat famous) episode with Mr. Freeze, in which Mr. Freeze was clearly not the most evil character of the episode. He was about to get revenge on the guy that was responsible for the death of Freeze's wife, and when Batman thwarts him, it's a real "YOU SONOFABITCH!" moment.